Gramene is knowledge for comparative functional analysis in the main crop and a model plant species. The current release, # 54, covering more than 1.7 million of the 44 genome reference genes, most of which are organized into 62 367 families of orthologous and paralogous genes through gene classification, whole genome alignments, and synteny. explanation of additional genes including ontology-based protein structure and function; genetic, epigenetic, and phenotypic diversity; and associated pathways.
This Gramene Plant Reactome provide network-level mobile knowledge of plant lines. In particular, he uses rice curated reference line projection Lower track for an additional 66 species based on orthology genes, and facilitates the expression of genes, gene-gene interaction, and user-defined omics data in the context of the path. As a community portal, Gramene software integrates best-of-class and infrastructure components including Ensembl genome browser, the browser path Reactome, and Expression Atlas widgets, and undergo periodic data and software upgrades. Via a powerful, intuitive search interface, users can easily demand in various portals and interactive analyzes search results by clicking on features as diverse as genomic context, greatly augmented the gene tree, anatomograms gene expression, relative paths, and external resources informatics.
All data in Gramene can be accessed either through a visual interface and program. The orthologous Matrix (OMA) is a leading resource for related genes in many species of all life. In the paper this update, we review the latest algorithmic improvements in the pipeline OMA, described the increase in species coverage (especially in plants and early-branching eukaryotes) and introduces some new features in the OMA web browser
important improvements including: (i) is scalable, interactive viewer for hierarchical orthologous groups; (Ii) an explanation of protein domains and domain-based links between groups of orthologous; (Iii) function to retrieve the phylogenetic marker gene to a subset of the species of interest; (Iv) new synteny viewer dot plan; and (v) improvement of the access program (REST API and web semantics), which will facilitate the merging of computing OMA pipeline analysis and integration with other resources bioinformatics.
Gramene 2018: unifying comparative genomics and pathway resources for plant research.
SynMap2 and SynMap3D: web-based whole genome synteny browser.
UNASSIGNED synteny visualization tool is now better focused on a small area of the order and did not describe the genome-wide trend, or cumbersome to use and create visualizations that are difficult to interpret. To address this challenge, The Comparative Genomics Platform (CoGe) has developed two web-based tools to visualize synteny across the genome.
SynMap2 and SynMap3D enables researchers to explore patterns of genome synteny whole (in two or three genomes, respectively) in a responsive, web-based visualization and virtual reality environments. Both tools have access to an extensive database of genome CoGe (containing more than 30 000 genome) as well as the option for users to upload their own data. By utilizing modern web technologies there is no installation required, making the tools widely accessible and easy to use.
Recombinant Mouse AMHR2 Protein (aa 16-147) (Mammalian-Cell)
Description: CytoSelect 96-Well Cell Transformation Assays (Cell Recovery Compatible) provide a robust system for detecting transformed cells, screening cell transformation inhibitors, and determining in vitro drug sensitivity. A proprietary modified soft agar matrix allows you to either quantify cells using the included fluorescent dye, or recover the cells for further analysis.
Description: CytoSelect 96-Well Cell Transformation Assays (Cell Recovery Compatible) provide a robust system for detecting transformed cells, screening cell transformation inhibitors, and determining in vitro drug sensitivity. A proprietary modified soft agar matrix allows you to either quantify cells using the included fluorescent dye, or recover the cells for further analysis.
Description: CytoSelect 96-Well Cell Transformation Assays (Cell Recovery Compatible) provide a robust system for detecting transformed cells, screening cell transformation inhibitors, and determining in vitro drug sensitivity. A proprietary modified soft agar matrix allows you to either quantify cells using the included fluorescent dye, or recover the cells for further analysis.
Description: CytoSelect 96-Well Cell Transformation Assays (Cell Recovery Compatible) provide a robust system for detecting transformed cells, screening cell transformation inhibitors, and determining in vitro drug sensitivity. A proprietary modified soft agar matrix allows you to either quantify cells using the included fluorescent dye, or recover the cells for further analysis.
Description: The 293RTV Cell Line is derived from the parental 293 cells but selected for attributes that increase retroviral production, including fimrer attachment and larger surface area.
Description: The 293LTV Cell Line is derived from the parental 293 cells but selected for attributes that increase lentiviral production, including fimrer attachment and larger surface area.
Description: The 293AAV Cell Line is derived from the parental 293 cells but selected for attributes that increase AAV production, including firmer attachment and larger surface area.
Description: The 293AD Cell Line is derived from the parental 293 cells but selected for attributes that increase adenovirus production, including firmer attachment and larger surface area.
Recombinant Plasmodium Berghei CG10 Protein (Mammalian cel)
Description: Our StemTAG 96-Well Stem Cell Colony Formation Assay provides a high-throughput method to quantify ES cells in just 7-10 days, and no manual cell counting is required. Once colonies are formed, they may be analyzed in three different ways: 1. Lyse cells, then quantify in a fluorescence plate reader using dye included in the kit; 2. Lyse cells, then quantify alkaline phosphatase activity using reagents provided; or 3. Recover colonies from matrix for further culture or analysis.
Description: Our StemTAG 96-Well Stem Cell Colony Formation Assay provides a high-throughput method to quantify ES cells in just 7-10 days, and no manual cell counting is required. Once colonies are formed, they may be analyzed in three different ways: 1. Lyse cells, then quantify in a fluorescence plate reader using dye included in the kit; 2. Lyse cells, then quantify alkaline phosphatase activity using reagents provided; or 3. Recover colonies from matrix for further culture or analysis.
Description: CytoSelect 96-Well Cell Transformation Assays (Cell Recovery Compatible) provide a robust system for detecting transformed cells, screening cell transformation inhibitors, and determining in vitro drug sensitivity. A proprietary modified soft agar matrix allows you to either quantify cells using the included fluorescent dye, or recover the cells for further analysis.
The orthologous Matrix (OMA) is a leading resource for related genes in many species of all life. In the paper this update, we review the latest algorithmic improvements in the pipeline OMA, described the increase in species coverage (especially in plants and early-branching eukaryotes) and introduces some new features in the OMA web browser.
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