Homology inference is important for evolutionary biology and mainly based on a significant sequence similarity, which, in general, is a good indicator of homology. The algorithm has also been designed to take advantage of in order to gene conservation as an indication of homologous regions. We have developed GenFamClust method is based on the quantification of both the conservation of gene order and sequence similarity.
In this study, we validate GenFamClust by comparing homology inference algorithms well known in synthetic dataset. We apply some popular clustering algorithms in homologs concluded by GenFamClust and other algorithms on datasets metazoan and study the results.
Accuracy, equality, interdependence, and other characteristics were investigated for a family of genes produced by a clustering algorithm. GenFamClust also applied to genes from a set of complete fungal genome and gene families that deduced using clustering. The resulting gene families compared with the gold standard of manually curated pillar of Yeast Gene Order Browser. We found that the gene-sequence component GenFamClust simple, yet biologically realistic, and local information for homologous synteny catch.
Research shows that GenFamClust pipe is more accurate, information, and comprehensive to draw conclusions and family homologs of genes and gene-family homology inference method more commonly used. Salmonids is a ray-finned fish that are 11 genera and at least 70 species, including Atlantic salmon, whitefishes, graylings, rainbow trout, and char.
The ancestors of all Salmonidae experience a whole genome duplication (WGD) ~ 80 million years ago, which resulted in the genome autotetraploid. rediplodization genomic still occur in salmonid species, providing a unique system for studying the consequences of the evolution of the whole genome duplication. In recent years, high-quality genome sequence of the Atlantic salmon and rainbow trout has been formed, because the values of their scientific and commercial. In this paper we introduce SalmoBase molecular tools for creating resources for salmonids publicly available in order visualization and analytic tools.
GenFamClust: an accurate, synteny-aware and reliable homology inference algorithm.
Synteny Portal: a web-based portal application for the analysis of synteny blocks.
The latest advances in next-generation sequencing technologies and genome assembly algorithms have allowed the accumulation of a large volume of genome sequences from different species. It has provided new opportunities for large-scale comparative genomics studies. Identifying and utilizing synteny blocks, which are regions of the genome conserved among several species, is key to understanding the genome architecture and history of the evolution of genomes. However, the construction and visualization of synteny blocks from several species are very challenging, especially for a biologist with the lack of computing skills.
Here, we present Synteny Portal, a web-based portal application versatility to build, visualize and browse the synteny blocks. With Synteny Portal, users can easily (i) block build synteny between species using alignments prebuilt at UCSC database of genome browser, (ii) visualizing and downloading relationship syntenic as high quality images, (iii) block browse synteny with genetic information, and (iv) to download the details of synteny blocks to be used as input for downstream synteny-based analysis, all within a web-based interface that is intuitive and easy to use.
Description: A sandwich ELISA for quantitative measurement of Rat Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Canine Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Canine Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Canine Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Porcine Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Porcine Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Porcine Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Goat Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Goat Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Goat Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Human Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Human Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Human Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Mouse Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Mouse Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Mouse Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: The protein encoded by the TBXT gene is an embryonic nuclear transcription factor that binds to a specific DNA element, the palindromic T-site. It binds through a region in its N-terminus, called the T-box, and effects transcription of genes required for mesoderm formation and differentiation. The protein is localized to notochord-derived cells.
Description: The protein encoded by the TBXT gene is an embryonic nuclear transcription factor that binds to a specific DNA element, the palindromic T-site. It binds through a region in its N-terminus, called the T-box, and effects transcription of genes required for mesoderm formation and differentiation. The protein is localized to notochord-derived cells.
Description: A sandwich ELISA for quantitative measurement of Rabbit Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Rabbit Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Rabbit Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Monkey Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Monkey Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Monkey Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: Quantitative sandwich ELISA for measuring Mouse Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Mouse Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Mouse Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Human Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Human Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Human Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Canine Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Canine Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Canine Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: A sandwich ELISA for quantitative measurement of Guinea pig Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Guinea pig Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: A sandwich ELISA for quantitative measurement of Guinea pig Brachyury protein(T) in samples from blood, plasma, serum, cell culture supernatant and other biological fluids. This is a high quality ELISA kit developped for optimal performance with samples from the particular species.
Description: Quantitative sandwich ELISA for measuring Chicken Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Chicken Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Description: Quantitative sandwich ELISA for measuring Chicken Brachyury protein (T) in samples from cell culture supernatants, serum, whole blood, plasma and other biological fluids.
Recombinant (E. coli) Neomycin phosphotransferase II (NPT II) protein (>99%, ~34 kda)\
Description: This product includes160 ul of 10 x Buffer T2, 84 ul of 10 x relaxed DNA, 6 ul of 1500 x H19 dye, 90 ul of 10 x ATP and 550 ul of 10 x H19 dilution buffer. It is for 20 assays in 96-well plate format. E. coli gyrase is not included.
Description: GlpK E. Coli Recombinant produced in E. coli is a single, non-glycosylated polypeptide chain containing 525 amino acids (1-502 a.a) and having a molecular mass of 58.6 kDa.;GlpK is fused to a 23 amino acid His-tag at N-terminus& purified by proprietary chromatographic techniques.
Recombinant Toxoplasma Gondii p30 Protein (E. coli)
We believe that Synteny portal will serve as a very valuable tool that will enable biologists to easily perform comparative genomic studies with the compensation limitations of existing tools. Synteny Portal is freely available on http://bioinfo.konkuk.ac.kr/synteny_portal.
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