SyMAP

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SyMAP (Synteny Mapping and Analysis Program) v3.1 is an automated system for identifying and displaying genome synteny alignments. The genomes may be represented either by FPC maps or by sequenced chromosomes (pseudomolecules).

If you use results from this page in a publication or website, please reference:
Soderlund et al. 2006, Genome Research 16:1159 (download).

Want to see your data in SyMAP? Email us at symap@agcol.arizona.edu.

This project is supported by the National Research Initiative of USDA's National Institute of Food and Agriculture, grant #0214643.

Sample Multi-Genome Alignments
SyMAP was developed for analysis of plant eudicots and monocots, but has also been tested on bacteria and yeast. Select a species group below to view the synteny alignments in SyMAP.
Yeast	K. lactis, K. thermotolerans, S. cerevisiae, S. kluyveri, and Z. rouxii
Enterobacteria	E. coli, Y. pestis, S. dysenteriae, S. typhimurium
Poaceae	Maize, Rice, Brachypodium, Sorghum
Fabaceae, et al.	Arabidopsis, Medicago, Soy, Poplar, Grape

All alignments were computed using default SyMAP parameters.
Genomes were not repeat masked prior to analysis.
MUMmer and BLAT were used to compute the raw anchors. Nucleotide alignment was used for all FPC alignments and the plant genome self-alignments, all others used protein alignment.