SyMAP (Synteny Mapping and Analysis Program) v3.1
is an automated system for
identifying and displaying genome synteny alignments. The genomes may be
represented either by FPC maps or by sequenced chromosomes (pseudomolecules).
If you use results from this page in a publication or website, please reference:
Soderlund et al. 2006, Genome Research16:1159
(download).
This project is supported by the National Research Initiative of USDA's National Institute of Food and Agriculture, grant #0214643.
Sample Multi-Genome Alignments
SyMAP was developed for analysis of plant eudicots and monocots but has also been tested on bacteria and yeast.
SyMAP has been tested on these platforms.
Select a species group to view the synteny alignments in SyMAP.
All alignments were computed using default SyMAP parameters.
Genomes were not repeat masked prior to analysis.
MUMmer and Blat were used to compute the raw anchors. Nucleotide alignment was used for all of the FPC alignments and plant genome self-alignments, all others used protein alignment.
