SyMAP (Synteny Mapping and Analysis Program) v3.2
is an automated system for
identifying and displaying genome synteny alignments. The genomes may be
represented either by FPC maps or by sequenced chromosomes (pseudomolecules).
If you use results from this page in a publication or website, please reference:
Soderlund et al. 2006, Genome Research16:1159
(download).
This project is supported by the National Research Initiative of USDA's National Institute of Food and Agriculture, grant #0214643.
Sample Multi-Genome Alignments
Tested platforms and known problems: There are some known minor problems with the 3D
display on MACs, and a major problem on MAC X 10.6.3, where the 'fix' needs to be done
on the user's machine (as described from this link).
SyMAP was developed for analysis of eudicots and monocots, but has also been tested on Enterobacteria and Yeast.
Select a group to view the synteny in SyMAP v3.2 ( last update 25 June 10)
All alignments were computed using default SyMAP parameters.
Genomes were not repeat masked prior to analysis.
MUMmer and
Blat were used to compute the raw anchors. Nucleotide alignment was used for all of the FPC alignments and plant genome self-alignments, all others used protein alignment.
